Software
Software
Embedded Files
Notice
Notice
We provide software for academic research purpose only and NOT for commercial or clinical use. For commercial use of our software, contact us (snu.list.software@gmail.com) for licensing via Seoul National University. To download software, please send an email to “snu.list.software@gmail.com” with the following information.Name:Affiliation:Software:When sending an email, an academic e-mail address (e.g. .edu, .ac.) is required.
Software List
Software List
• DeepRF_SLR
https://github.com/SNU-LIST/DeepRF_SLR– Summary: Improved multiband spin-echo pulse design method based on the SLR algorithm and deep reinforcement learning.– Requirement: Seoul National University material transfer agreement, Ubuntu 18.04 LTS, MATLAB R2019a, Python 3.6.8, etc.– Reference:Shin D, Ji S, Lee D, Lee J, Oh SH, Lee J*, “Deep Reinforcement Learning Designed RF Pulse: DeepRF_SLR,” arXiv. 2019 Dec;1912.09015.• DeepRF_SLR
• QSMnet+
https://github.com/SNU-LIST/QSMnet– Summary: Improves linearity of QSMnet for reliable susceptibility mapping (QSMnet+)– Requirement: Seoul National University material transfer agreement, MATLAB R2015b, Python 2.7– References:Yoon J, Gong E, Chatnuntawech I, Bilgic B, Lee J, Jung W, Ko J, Jung H, Setsompop K, Zaharchuk G, Kim EY, Pauly J, Lee J*, “Quantitative susceptibility mapping using deep neural network: QSMnet,” NeuroImage, 2018, 179:199-206Jung W, Yoon J, Ji S, Choi JY, Kim JM, Nam Y, Kim EY, Lee J*, “Exploring linearity of deep neural network trained QSM: QSMnet+,” arXiv. 2019 Sep;1909.07716.• QSMnet+
• Susceptibility map weighted imaging (SMwI) package for nigrosome 1 imaging
– Summary: This toolbox generates a susceptibility map weighted image for nigrosome 1 imaging– Requirement: Seoul National University material transfer agreement, MATLAB R2014b– References:Nam Y, Gho SM, Kim DH, Kim EY*, Lee J*, “Imaging of nigrosome 1 in substantia nigra at 3T using multiecho susceptibility map-weighted imaging (SMWI),” JMRI, 2017, 46(2):528-536Sung YH, Lee J, Nam Y, Shin HG, Noh Y, Shin DH, Kim EY*, “Differential involvement of nigral subregions in idiopathic parkinson’s disease,” Human Brain Mapping, 2018, 39(1): 542-553• Susceptibility map weighted imaging (SMwI) package for nigrosome 1 imaging
• ViSTa myelin water weighted imaging
– Summary: High performance myelin water weighted imaging sequence– Requirement: Seoul National University material transfer agreement, C2P transfer via Siemens, available for VB17 and VE11C software versions– References:SH Oh, M Bilello, M Schindler, CE Markowitz, JA Detre, J Lee*, “Direct visualization of short transverse relaxation time component (ViSTa),” NeuroImage, 2013, 83:485-92Choi JY+, Jeong IH+, Oh SH, Oh CH, Kim HJ*, Lee J*, “Evaluation of normal-appearing white matter in multiple sclerosis using ViSTa myelin water imaging and GRASE myelin water imaging,” JMRI, 2018, available online• ViSTa myelin water weighted imaging
• GRASE myelin water imaging
– Summary: Conventional myelin water imaging sequence– Requirement: Seoul National University material transfer agreement, C2P transfer via Siemens, available for VB17 and VE11C software versions – Reference:Jeong IH+, Choi JY+, Kim SH, Hyun JW, Joung AR, Lee J*, Kim HJ*, “Normal appearing white matter demyelination in neuromyelitis optica spectrum disorder,” Eur J Neurol, 2017, 24(4):652-658 • GRASE myelin water imaging
• B0 navigator correction
– Summary: Artifacts correction for temporal B0 field fluctuation using B0 navigator– Requirement: Seoul National University material transfer agreement, MATLAB R2014b or upper version– Reference: Nam Y, Kim DH, Lee J*, “Physiological noise compensation in gradient-echo myelin water imaging,” NeuroImage, 2015, 120:345-349• B0 navigator correction
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