Publications
Journal Publications
QSM Consensus Organization Committee, B Bilgic, M Costagli, KS Chan, J Duyn, C Langkammer, J Lee, X Li, C Liu, JP Marques, C Milovic, SD Robinson, F Schweser, K Shmueli, P Spincemaille, S Straub, P Zijl, Y Wang, ISMRM EMTP Study Group
Recommended implementation of quantitative susceptibility mapping for clinical research in the brain: A consensus of the ISMRM electro-magnetic tissue properties study group
Magn Res Med 2024HW Kim, S Lee, JH Yang, Y Moon, Lee J, WJ Moon
Cortical Iron Accumulation as an Imaging Marker for Neurodegeneration in Clinical Cognitive Impairment Spectrum: A Quantitative Susceptibility Mapping Study
KJR, 2023 24:1131-1141Choi S, Kim M, Kim T, Choi EJ, Lee J, Moon SY, Cho SS, Lee J, Kwon JS
Fronto-striato-thalamic circuit connectivity and neuromelanin in schizophrenia: an fMRI and neuromelanin-MRI study
Schizophrenia, AcceptedShin H, Kim T, Park J, Raj H, Jabbar MS, Abebaw ZD, Lee J, Van CC, Kim H, Shin D
Pulmonary abnormality screening on chest x-rays from different machine specifications: a generalized AI-based image manipulation pipeline
Eur Radiol Exp AcceptedJeong H, Byun H, Kang DU, Lee J*
BlindHarmony: “Blind” Harmonization for MR Images via Flow model
International Conference on Computer Vision (ICCV), 2023 21129-21139Lee S, Shin HG, Kim M, Lee J*
Depth-wise profiles of iron and myelin in the cortex and white matter
NeuroImage 2023 273:120058Kim W, Shin HG, Lee H, Park D, Kang J, Nam Y, Lee J, Jang J
χ-separation imaging for diagnosis of multiple sclerosis versus neuromyelitis optica spectrum disorder
Radiology 2023 307:e220941Ji S, Choi EJ, Sohn B, Baik K, Shin NY, Moon WJ, Park S, Song S, Lee PH, Shin DH, Oh SH, Kim EY, Lee J*
Sandwich spatial saturation for neuromelanin-sensitive MRI: Development and multi-center trial
NeuroImage 2022 261:119706Zhang Z, Cho J, Wang L, Liao C, Shin HG, Cao X, Lee J, Xu J, Zhang T, Ye H, Setsompop K, Liu H, Bilgic B
Blip up-down acquisition for spin- and gradient-echo imaging (BUDA-SAGE) with self-supervised denoising enables efficient T2, T2*, para- and dia-magnetic susceptibility mapping
Magn Res Med 2022 88(2):633-650Ji S, Yang D, Lee J, Choi SH, Kim H, Kang KM
[REVIEW] Synthetic MRI: Technologies and applications in neuroradiology
JMRI 2022 55(4):1013-1025Jung W, Steffen Bollmann, Lee J*
[REVIEW] Overview of quantitative susceptibility mapping using deep learning – current status, challenges and opportunities
NMR Biomed 2022 35(4) e4292Park J, Jung W, Choi EJ, Oh SH, Jang J, Shin D, An H, Lee J*
DIFFnet: Diffusion parameter mapping network generalized for input diffusion gradient schemes and b-values
IEEE Trans Medical Imaging 2022 41:491-499Shin D, Kim Y, Oh C, An H, Park J, Kim J, Lee J*
Deep reinforcement learning-designed radiofrequency waveform in MRI
Nature Machine Intelligence 2021 3:985-994 Youtube linkShin HG, Lee J, Yun YH, Yoo SH, Jang J, Oh SH, Nam Y, Kim S, Fukunaga M, Kim W, Choi HJ, Lee J*
χ-separation: Magnetic susceptibility source separation toward iron and myelin mapping in the brain
Neuroimage 2021 240:118371Lee S, Yoo RE, Choi SH, Oh SH, Ji S, Lee J, Huh KY, Lee JY, Hwang I, Kang KM, Yun TJ, Kim JH, Sohn CH
Contrast-enhanced MRI T1 mapping for quantitative evaluation of putative dynamic glymphatic activity in the human brain in sleep-wake states
Radiology 2021 300(3):661-668Ji S, Jeong J, Oh SH, Nam Y, Choi SH, Shin HG, Shin D, Jung W, and Lee J*
Quad-contrast imaging: simultaneous acquisition of four contrast-weighted images (PD-weighted, T2-weighted, PD-FLAIR and T2-FLAIR images) with synthetic T1-weighted image, T1- and T2-maps
IEEE Trans Medical Imaging 2021 40(12):3617-3626Lee J, Hyun JW, Lee J, Choi EJ, Shin HG, Min K, Nam Y, Kim HJ, Oh SH
[REVIEW] So you want to image myelin using MRI: An overview and practical guide for myelin water imaging
JMRI 2021 53(2):360-373Eun H+, Jeong H+, Lee J, Shin HG, and Lee J*
A geometric approach to separate the effects of magnetic susceptibility and chemical shift/exchange in a phantom with isotropic magnetic susceptibility
Magn Res Med 2021 85(1):281-289An H, Shin HG, Ji S, Jung W, Oh SH, Shin D, Park J, Lee J*,
DeepResp: Deep learning solution for respiration-induced B0 fluctuation artifacts in multi-slice GRE
NeuroImage 2021 224:117432Shin D, Ji S, Lee D, Lee J, Oh SH, Lee J*,
Deep reinforcement learning designed Shinnar-Le Roux RF pulse using root-flipping: DeepRFSLR
IEEE Trans Medical Imaging 2020 39(12):4391-4400Polak D, Chatnuntawech I, Yoon J, Iyer SS, Milovic C, Lee J, Bachert P, Adalsteinsson E, Setsompop K, Bilgic B
Nonlinear dipole inversion (NDI) enables robust quantitative susceptibility mapping (QSM)
NMR in Biomed 2020, 33(12):e4271Jung W, Yoon J, Ji S, Choi JY, Kim JM, Nam Y, Kim EY, Lee J*
Exploring linearity of deep neural network trained QSM: QSMnet+
Neuroimage 2020 211:116619Lee J, Lee D, Choi JY, Shin D, Shin HG, Lee J*
Artificial neural network for myelin water imaging
Magn Res Med 2020 83(5):1875-1883Choi JY, Hart T, Whyte J, Rabinowitz AR, Oh SH, Lee J*, Kim JJ*
Myelin water imaging of moderate to severe diffuse traumatic brain injury
NeuroImage in Clinic 2019 22:101785Shin HG, Oh SH, Fukunaga M, Nam Y, Lee D, Jung W, Jo M, Ji S, Choi JY, Lee J*
Advances in gradient echo myelin water imaging at 3T and 7T
NeuroImage 2019 188:835-844Kim JY, Yoon JM, Park JE, Choi EJ, Lee JH, Kim HS
Radiomics in peritumoral non-enhancing regions: fractional anisotropy and cerebral blood volume improve prediction of local progression and overall survival in patients with glioblastoma
Neuroradiology 2019 61:1261–1272Sung YH, Lee J, Nam Y, Shin HG, Noh Y, Hwang KH, Lee H, Kim EY,
Initial diagnostic workup of Parkinsonism: dopamine transporter positron emission tomography versus susceptibility map-weighted imaging at 3T
Parkinsonism & Related Disorders 2019 62:171-178Choi JY, Lee J, Nam Y, Lee J, Oh SH
Improvement of reproducibility in quantitative susceptibility mapping (QSM) and transverse relaxation rates (R2*) after physiological noise correction
JMRI 2019 49(6):1769-1776Choi JY+, Jeong IH+, Oh SH, Oh CH, Kim HJ*, Lee J*
Evaluation of normal-appearing white matter in multiple sclerosis using ViSTa myelin water imaging and GRASE myelin water imaging
JMRI 2019 49(4):1091-1098Kim EY, Sung YH, Lee J
Nigrosome 1 imaging: technical considerations and clinical applications
British Journal of Radiology, 2019, 92:20180842Lee LE, Ljungberg E, Shin D, Figley CR, Vavasour IM, Rauscher A, Cohen-Adad J, Li DKB, Traboulsee AL, MacKay AL, Lee J, Kolind SH
Inter-vendor reproducibility of myelin water imaging using a 3D gradient and spin echo sequence
Frontiers in Neuroscience 2018 12:854Yoon J, Gong E, Chatnuntawech I, Bilgic B, Lee J, Jung W, Ko J, Jung H, Setsompop K, Zaharchuk G, Kim EY, Pauly J, Lee J*
Quantitative susceptibility mapping using deep neural network: QSMnet
NeuroImage 2018 179:199-206Lee DH, Lee JG, Lee J, Nam Y
Single-scan z-shim method for reducing susceptibility artifacts in gradient echo myelin water imaging
Magn Res Med 2018 80(3):1101-1109Sung YH, Lee J, Nam Y, Shin HG, Noh Y, Shin DH, Kim EY
Differential involvement of nigral subregions in idiopathic Parkinson’s disease,
Human Brain Mapping 2018 39(1):542-553Oh SH, Sin WY, Lee J, Lowe MJ
Variable density magnetization transfer (vdMT) imaging for 7 tesla MR imaging
NeuroImage 2018 168:242-249Jung WJ, Lee J, Shin HG, Nam Y, H Zhang, Oh SH, Lee J*
Whole brain g-ratio mapping using myelin water imaging (MWI) and neurite orientation dispersion and density imaging (NODDI),
NeuroImage 2018 182:379-388Kim EY, Sung YH, Shin HG, Noh Y, Nam Y*, Lee J*
Diagnosis of early-stage idiopathic Parkinson’s disease using high-resolution quantitative susceptibility mapping with histogram analysis in the substantia nigra at 3T
J Clin Neurol 2018 14(1):90-97Lee J, Shin HG, Jung WJ, Nam Y, Oh SH, Lee J*
An R2* model of white matter for fiber orientation and myelin concentration
NeuroImage 2017 162:269-275Nam Y, Gho SM, Kim DH, Kim EY*, Lee J*
Imaging of nigrosome 1 in substantia nigra at 3T using multiecho susceptibility map-weighted imaging (SMWI)
JMRI 2017 46(2):528-536Jeong IH+, Choi JY+, Kim SH, Hyun JW, Joung AR, Lee J*, Kim HJ*
Normal appearing white matter demyelination in neuromyelitis optica spectrum disorder
Eur J Neurol 2017 24(4):652-658Lee J*, Nam Y, Choi JY, Kim EY, Oh SH, Kim DH*
[REVIEW] Mechanisms of T2* anisotropy and gradient echo myelin water imaging
NMR Biomed 2017 30(4):e3513Stafford RB, Woo MK, Oh SE, Dolui S, Zhao T, Kim YB, Detre JA, Cho ZH*, Lee J*
An actively decoupled dual transceiver coil system for continuous ASL at 7 T
International Journal of Imaging Systems and Technology 2016 26:106-115Jeong IH+, Choi JY+, Kim SH, Hyun JW, Joung A, Lee J*, Kim HJ*
Comparison of myelin water fraction values in periventricular white matter lesions between multiple sclerosis and neuromyelitis optica spectrum disorder
Multiple Sclerosis 2016 22(12):1616-1620Sung YH, Noh Y, Lee J, Kim EY
Drug-induced Parkinsonism versus idiopathic Parkinson disease
Radiology 2016 279:849-858Woo MK, Hong SM, Lee J, Kang CK, Park SY, Son YD, Kim YB, Cho ZH
Extended monopole antenna array with individual shield (EMAS) coil – an improved monopole antenna design for brain imaging at 7T MRI
Magn Res Med 2016 75:2566-2572Nam YH, Kim DH, Lee J*
Physiological noise compensation in gradient-echo myelin water imaging
NeuroImage 2015 120:345-349Noh Y, Sung Y, Lee J, Kim EY
Nigrosome 1 imaging at 3T MRI for the diagnosis of early-stage idiopathic Parkinson’s disease: assessment of diagnostic accuracy and agreement on imaging asymmetry and clinical laterality
AJNR 2015 36:2010-2016Nam YH, Lee J*, Hwang D, Kim DH*
Improved estimation of myelin water fraction using complex model fitting
NeuroImage 2015 116:214-221Kim D, Lee HM, Oh SH, Lee J*
Probing signal phase in direct visualization of short transverse relaxation time component (ViSTa)
Magn Res Med 2015 74:499-505Sullivan S, Eucker SA, Gabrieli D, Bradfield C, Coats B, Maltese MR, Lee J, Smith C, Margulies SS
White matter tract-oriented deformation predicts traumatic axonal brain injury and reveals rotational direction-specific vulnerabilities
Biomech Model Mechanobiol 2015 14:877-896SS Oh, Y Han, J Lee, Yun SD, JK Kang, EM Lee, HW Yoon, JY Chung, HW Park
A pulsed artifact removal method considering artifact variations in the simultaneous recording of EEG and fMRI.
Neurosci Res 2014 81-82:42-50SS Oh, SH Oh, Y Nam, D Han, RB Stafford, J Hwang, DH Kim, HW Park, J Lee*
An improved susceptibility weighted imaging method using multi-echo acquisition.
Magn Res Med 2014 72:452-458SH Oh, M Bilello, M Schindler, CE Markowitz, JA Detre, J Lee*
Direct visualization of short transverse relaxation time component (ViSTa).
NeuroImage 2013 83:485-92SH Oh, YB Kim, ZH Cho, J Lee*
Origin of B0 orientation dependent R2* (=1/T2*) in white matter.
NeuroImage 2013 73:71-9R Datta, J Lee, BB Avants, CH Vite, B Tseng, JC Gee, GD Aguirre, GK Aguirre
A digital atlas of the dog brain.
PLOS ONE 2012 7:e52140J Lee*, K Shmueli, B-T Kang, B Yao, M Fukunaga, P van Gelderen, S Palumbo, F Bosetti, AC Silva, JH Duyn
The contribution of myelin to magnetic susceptibilty-weighted contrasts in high-field MRI of the brain.
Neuroimage 2012 59:3967-75TS Kim, J Lee*, JH Lee, GH Glover, JH Pauly
Analysis of the BOLD characteristics in pass-band bSSFP fMRI.
International Journal of Imaging Systems and Technology 2012 22:23-32GT Buracas, Y Jung, J Lee, RB Buxton, EC Wong, TT Liu
On multiple alternating steady states induced by periodic spin phase perturbation waveforms.
Magn Reson Med 2012 67:1412-8P van Gelderen, JA de Zwart, J Lee, P Sati, DS Reich, JH Duyn
Nonexponential T2* decay in white matter.
Magn Reson Med 2012 67:110-7J Lee*, P van Gelderen, LW Kuo, H Merkle, AC Silva, JH Duyn
T2*-based fiber orientation mapping.
Neuroimage 2011 57:225-34J Lee*, M Fukunaga, JH Duyn
Improving contrast to noise ratio of resonance frequency contrast images (phase images) using balanced steady-state free precession.
Neuroimage 2011 54:2779-88J Lee*, K Shmueli, M Fukunaga, P van Gelderen, H Merkle, AC Silva, JH Duyn
Sensitivity of MRI resonance frequency to the orientation of brain tissue microstructure.
PNAS 2010 107:5130-5M Fukunaga, T-Q Li, P van Gelderen, Y de Zwart, K Shmueli, B Yao, J Lee, D Maric, M Aronova, G Zhang, R Leapman, J Schenck, H Merkle, JH Duyn
Layer-specific variation of iron content in cerebral cortex as a source of MRI contrast.
PNAS 2010 1073834-9J Lee*, Y Hirano, M Fukunaga, AC Silva, JH Duyn
On the contribution of deoxyhemoglobin to MRI gray-white matter phase contrast at high field.
Neuroimage 2010 49:193-8L Qin, P van Gelderen, JA Derbyshire, F Jin, J Lee, JA de Zwart, Y Tao, JH Duyn
Prospective head movement correction for high resolution MRI using an in-bore optical tracking system.
Magn Reson Med 2009 62:924-34J Lee*, M Lustig, DH Kim, JM Pauly
Improved shim methods based on the minimization of the maximum off-resonance frequency for balanced SSFP.
Magn Reson Med 2009 61:1500-6A Schwartzman, RF Dougherty, J Lee, D Ghahremani, JE Taylor
Empirical null and false discovery rate analysis in neuroimaging.
Neuroimage 2009 44:71-82J Lee*, M Shahram, A Schwartzman, JM Pauly
Complex data analysis in high-resolution SSFP fMRI.
Magn Reson Med 2007 57:905-17J Lee*, JM Santos, SM Conolly, KL Miller, BA Hargreaves, JM Pauly
Respiration-induced B0 field fluctuation compensation in balanced SSFP: real-time approach for transition-band SSFP fMRI.
Magn Reson Med 2006 55:1197-201KL Miller, BA Hargreaves, J Lee, D Ress, RC deCharms, JM Pauly
Functional brain imaging using a blood oxygenation sensitive steady state.
Magn Reson Med 2003 50:675-83